If you're using a 7.2 version (please also mention service pack level in requests) where the dispatchers have housekeeping options you do not need to care about the uPrivReconcile function. In addition the uPrivReconcile call should only be required when you do hierarchy changes in earlier versions, such as linking role to role, or privilege to role. There's a template job provided with the product that used to be scheduled to run every X minutes to do this.
If you have this, don't worry about uPrivReconcile:
You can also check your database to see if there's any entries that require privilege reconciliation using
select count(*) from MXIV_DIRTY_MSKEYS
Note that in some older SP releases this view that returns inactive entries that can't be reconciled until they're activated again.
Where do you see this "conflicting" status btw? Is it in the Workflow UI?
Br,
Chris